After playing in the major leagues, Pafko managed in the minor leagues, including a two-year stint as the skipper for the Kinston Eagles in the Carolina League. Pafko also scouted for the Montreal Royals in the late 1960s. He was also active in the Milwaukee Braves Historical Association. He eventually settled in the Chicago area, and always provided good copy for the press, especially when the subject of the Cubs would come up. When the Cubs won their division in 1984, Pafko mused, "I never dreamed it would take them 39 years to win again. I thought they would have won by accident before then!" Pafko was named to the Cubs All-Century team at the turn of the 21st century. As of July 2013, Pafko and Lennie Merullo (died May 30, 2015) were the last two men living who played for the Cubs in a World Series.